AP3 is an improved proteotypic peptide prediction tool by taking the peptide digestibility into consideration. Based on our test, AP3 has good generalization ability and exhibit superior performance comparing with other existing peptide detetability prediction tools.
---- The R2014a MATLAB Runtime is requiered. You can download it from here or from the official website.
---- AP3 can support Windows 7 or higher, and the operating system should be 64-bit.
---- There is a user guide for this software tool.
---- The source code and executable file for retaining AP3 can be downloaded from here.
---- Download the test data here.
Having trouble with AP3? Please do not hesitate to contact us and we’ll help you sort it out.
Yan Fu: yfu(at)amss(dot)ac(dot)cn
Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100049, China.
Cheng Chang: changchengbio(at)163(dot)com
Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.