Software

PTMiner

A software tool for localization and quality control of protein modifications detected by both open and close search

SAVControl

A software tool for quality control of single amino acid variations detected by tandem mass spectrometry

pMatchGlyco

A software tool for N-Linked glycopeptide identification based on open mass spectral library search

LFAQ

A software tool for prediction of peptide quantitative factors and unbiased label-free absolute protein quantification

AP3

A software tool for prediction of peptide detectabilities in proteomics using random forest algorithm

DeepDigest

A software tool for prediction of peptide digestibilities in proteomics using deep learning